The sign quoted a bible verse that read, "Act justly, love mercy, walk humbly with God" followed by "Black Lives Matter."
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The community claims the banner has been damaged twice in the past week.
Frustrated residents showed their support for the message the church was trying to send at a small rally.
RELATED: Chicago firefighters accused of removing Black Lives Matter banner on South Side
CFD firefighters accused of removing BLM banner
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Most of the banner has been taped back together.
Police say they are investigating the incident.