Some of the tweets were up for about 30 minutes before Twitter took them down.
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The tweets included messages such as "Hitler is innocent" and, using a vulgarity, asked "bald skeleton head," referring to Dorsey, to unsuspend certain accounts.
Twitter says it's investigating. The company suspended accounts that the hacker or hackers retweeted while they had control of Dorsey's account.
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The incident comes as Twitter and Dorsey have promised to improve the "health" and civility of discourse on the social media service, cracking down on hate speech and abuse.